3:26 p.m.
================================================================
Dear Bug Team!
I am running xemacs 21.4.20 under RHEL5 on an x86_64 machine. Today, I
opened a text file that was originally created with vim. In xemacs, vim-created
files have
characters at the end of every line. Before my upgrade from
RHEL4 to RHEL5, I would run the following to clean up such files.
M-x replace-string <ret>
C-q C-m <ret>
<ret>
and then proceed. However, now, after I do the C-q C-m, there is a 2
second pause, my entire X session crashes, and I have to log in again and
start over.
Here is a snippet of text that, when saved in its own buffer, will cause
the problem.
-------begin problem text
# MH step
alpha = exp(lognew + logknew - logold - logkold)
if(alpha=="NaN") alpha=-1
u = runif(n=1,min=0, max=1)
if(u < alpha) {
oldbetas[i,] = betan
logl = logl + lognew } else {
logl = logl + logold
rej = rej+1 }
}
# Draw B-bar and V as a multivariate regression
out=rmultireg(oldbetas,Z,Deltabar,ADelta,nu,V)
oldDelta=out$B
oldVbeta=out$Sigma
oldVbetai=chol2inv(chol(oldVbeta))
if((j%%100)==0)
{
ctime=proc.time()[3]
timetoend=((ctime-itime)/j)*(R-j)
cat(" ",j,"
(",round(timetoend/60,1),")",fill=TRUE)
fsh() }
mkeep=j/keep
if(mkeep*keep == (floor(mkeep)*keep))
{Deltadraw[mkeep,]=as.vector(oldDelta)
Vbetadraw[mkeep,]=as.vector(oldVbeta)
betadraw[,,mkeep]=oldbetas
llike[mkeep]=logl
reject[mkeep]=rej/nlgt
}
}
----------end problem text
Can you please help?
Thanks,
Michael Braun
braunm(a)mit.edu
================================================================
System Info to help track down your bug:
---------------------------------------
uname -a: Linux braunm2.mit.edu 2.6.18-8.1.8.el5 #1 SMP Mon Jun 25 17:06:07 EDT 2007
x86_64 x86_64 x86_64 GNU/Linux
./configure
XEmacs 21.4.20 "Double Solitaire" configured for `x86_64-unknown-linux'.
Compilation / Installation:
Source code location: /home/braunm/downloads/xemacs-21.4.20
Installation prefix: /usr/local
Operating system description file: `s/linux.h'
Not using any machine description file
Compiler: gcc -g -O3 -Wall -Wno-switch -Winline
-Wmissing-prototypes -Wsign-compare -fno-strict-aliasing -Wshadow
Compiler version: gcc (GCC) 4.1.1 20070105 (Red Hat 4.1.1-52)
Compiler specs file: specs.
Relocating allocator for buffers: no
GNU version of malloc: yes
- Using Doug Lea's new malloc from the GNU C Library.
libc: glibc-2.5-12
glibc-2.5-12
Window System:
Compiling in support for the X window system:
- X Windows headers location:
- X Windows libraries location: /usr/lib64
- Handling WM_COMMAND properly.
Compiling in support for the Athena widget set:
- Athena headers location: X11/Xaw
- Athena library to link: Xaw
Using Lucid menubars.
Using Lucid scrollbars.
Using Athena dialog boxes.
TTY:
Compiling in support for ncurses.
Compiling in support for GPM (General Purpose Mouse).
Images:
Compiling in support for GIF images (builtin).
Compiling in support for XPM images.
Compiling in support for PNG images.
Compiling in support for JPEG images.
Compiling in support for TIFF images.
Sound:
Compiling in support for sound (native).
Databases:
Compiling in support for Berkeley database.
Compiling in support for LDAP.
Internationalization:
Mail:
Compiling in support for "dot-locking" mail spool file locking method.
Other Features:
Inhibiting IPv6 canonicalization at startup.
Compiling in support for dynamic shared object modules.
Using the new portable dumper.
Load-Path Lisp Shadows:
----------------------
(/usr/local/lib/xemacs/xemacs-packages/lisp/build/build-report
/usr/local/lib/xemacs-21.4.20/lisp/build-report)
Installed XEmacs Packages:
-------------------------
(zenirc ver: 1.16 upstream: 2.112)
(xwem ver: 1.22 upstream: lg(a)xwem.org--2005/xwem--main--2.1--versionfix-1)
(xslt-process ver: 1.12 upstream: 1.2.1)
(xslide ver: 1.09 upstream: 0.2.2)
(xlib ver: 1.14 upstream: lg(a)xwem.org--2005/xlib--main--2.1--version-0)
(xetla ver: 1.01 upstream: steve(a)eicq.org--2005/xetla--main--1.1--version-0)
(xemacs-devel ver: 1.75 upstream: No-Upstream-Ver)
(xemacs-base ver: 2.1 upstream: No-Upstream-Ver)
(x-symbol ver: 1.1 upstream: 4.5.1)
(w3 ver: 1.33 upstream: 4.0pre47)
(vm ver: 7.22 upstream: 7.17)
(viper ver: 1.55 upstream: 3.09)
(view-process ver: 1.13 upstream: 2.4)
(vhdl ver: 1.22 upstream: 3.33.12)
(vc-cc ver: 1.22 upstream: No-Upstream-Ver)
(vc ver: 1.41 upstream: No-Upstream-Ver)
(tramp ver: 1.37 upstream: 2.0.55)
(tpu ver: 1.14 upstream: 4.2X)
(tooltalk ver: 1.15 upstream: No-Upstream-Ver)
(tm ver: 1.38 upstream: No-Upstream-Ver)
(time ver: 1.14 upstream: 1.17)
(textools ver: 1.15 upstream: No-Upstream-Ver)
(text-modes ver: 1.92 upstream: No-Upstream-Ver)
(texinfo ver: 1.3 upstream: No-Upstream-Ver)
(supercite ver: 1.21 upstream: 3.55x3)
(strokes ver: 1.1 upstream: No-Upstream-Ver)
(speedbar ver: 1.28 upstream: 0.14beta4)
(sounds-wav ver: 1.12 upstream: No-Upstream-Ver)
(sounds-au ver: 1.12 upstream: No-Upstream-Ver)
(sml-mode ver: 0.12 upstream: 3.9.5)
(slider ver: 1.15 upstream: 0.3x1)
(sieve ver: 1.18 upstream: No-Upstream-Ver)
(sh-script ver: 1.22 upstream: 2.0f)
(sgml ver: 1.11 upstream: No-Upstream-Ver)
(semantic ver: 1.2 upstream: 1.4.4)
(scheme ver: 1.15 upstream: No-Upstream-Ver)
(sasl ver: 1.16 upstream: 1.14.4)
(ruby-modes ver: 1.02 upstream: 1.6.8)
(rmail ver: 1.14 upstream: No-Upstream-Ver)
(riece ver: 1.23 upstream: 3.1.2)
(reftex ver: 1.34 upstream: 4.21)
(re-builder ver: 1.05 upstream: 1.20)
(python-modes ver: 1.08 upstream: No-Upstream-Ver)
(psgml-dtds ver: 1.03 upstream: No-Upstream-Ver)
(psgml ver: 1.44 upstream: 1.3.1)
(ps-print ver: 1.11 upstream: 6.5.6)
(prog-modes ver: 2.1 upstream: No-Upstream-Ver)
(pgg ver: 1.06 upstream: 0.1)
(perl-modes ver: 1.09 upstream: No-Upstream-Ver)
(pcomplete ver: 1.04 upstream: 1.1.6)
(pcl-cvs ver: 1.67 upstream: R-2_9_9)
(pc ver: 1.28 upstream: No-Upstream-Ver)
(os-utils ver: 1.39 upstream: No-Upstream-Ver)
(oo-browser ver: 1.04 upstream: 4.08)
(ocaml ver: 0.06 upstream: 3.06)
(net-utils ver: 1.52 upstream: N/A)
(mmm-mode ver: 1.02 upstream: 0.4.7)
(misc-games ver: 1.19 upstream: No-Upstream-Ver)
(mine ver: 1.16 upstream: 1.9)
(mh-e ver: 1.29 upstream: 7.4.2)
(mew ver: 1.19 upstream: 1.94.2)
(mailcrypt ver: 2.14 upstream: 3.5.8)
(mail-lib ver: 1.79 upstream: No-Upstream-Ver)
(jde ver: 1.51 upstream: 2.3.3)
(ispell ver: 1.32 upstream: 3.6)
(ilisp ver: 1.34 upstream: 5.12.0)
(igrep ver: 1.14 upstream: 2.111)
(idlwave ver: 1.32 upstream: 5.1)
(ibuffer ver: 1.09 upstream: No-Upstream-Ver)
(hyperbole ver: 1.16 upstream: 4.18)
(hm--html-menus ver: 1.23 upstream: 5.9)
(haskell-mode ver: 1.11 upstream: 2.1)
(gnus ver: 1.91 upstream: 5.10.8)
(gnats ver: 1.17 upstream: 3.101)
(general-docs ver: 1.04 upstream: No-Upstream-Ver)
(games ver: 1.17 upstream: 1.04)
(fsf-compat ver: 1.15 upstream: No-Upstream-Ver)
(frame-icon ver: 1.11 upstream: No-Upstream-Ver)
(fortran-modes ver: 1.05 upstream: No-Upstream-Ver)
(forms ver: 1.15 upstream: 2.37)
(footnote ver: 1.16 upstream: 0.18x)
(eudc ver: 1.39 upstream: 1.32)
(eterm ver: 1.17 upstream: No-Upstream-Ver)
(eshell ver: 1.1 upstream: 2.4.1)
(escreen ver: 1.01 upstream: 1.16)
(erc ver: 0.21 upstream: Version 5.1.2 Revision: 1.796.2.6)
(emerge ver: 1.11 upstream: No-Upstream-Ver)
(elib ver: 1.11 upstream: 1.0)
(eieio ver: 1.05 upstream: 0.17)
(efs ver: 1.33 upstream: 1.23)
(edt ver: 1.13 upstream: No-Upstream-Ver)
(edit-utils ver: 2.37 upstream: No-Upstream-Ver)
(ediff ver: 1.68 upstream: 2.75)
(edebug ver: 1.22 upstream: No-Upstream-Ver)
(ecrypto ver: 0.2 upstream: 2.0)
(ecb ver: 1.22 upstream: 2.31)
(docbookide ver: 0.08 upstream: 0.1)
(dired ver: 1.17 upstream: 7.13)
(dictionary ver: 1.16 upstream: 1.8)
(debug ver: 1.18 upstream: No-Upstream-Ver)
(crisp ver: 1.15 upstream: 1.34)
(cookie ver: 1.15 upstream: No-Upstream-Ver)
(clearcase ver: 1.1 upstream: /main/laptop/165)
(cc-mode ver: 1.45 upstream: 5.30.10)
(calendar ver: 1.32 upstream: No-Upstream-Ver)
(calc ver: 1.26 upstream: 2.02fX3)
(c-support ver: 1.22 upstream: No-Upstream-Ver)
(build ver: 1.14 upstream: 2.02)
(bbdb ver: 1.32 upstream: 2.35)
(auctex ver: 2007.0112 upstream: 11.84)
(apel ver: 1.32 upstream: 10.6)
(ada ver: 1.14 upstream: 2.27)
(Sun ver: 1.16 upstream: No-Upstream-Ver)
Installed Modules:
-----------------
Features:
--------
(mail-abbrevs xemacsbug shadow sendmail rfc822 efs-cu font disp-table
python-mode info-look info ess-toolbar ess-mous mouseme ess-menu ess-swv
ess-noweb noweb-font-lock-mode essl-bugs essd-omg essl-omg essd-els
essd-sas essl-sas essa-sas rtf-support shell essd-arc essd-vst essd-xls
essl-lsp essd-sta essl-sta make-regexp essd-sp6 essd-sp5 essd-sp3 essd-r
essl-s ess-inf ess-utils ess-mode noweb-mode ess ess-cust ess-emcs ess-site
jde jde-open-source jde-class jde-parse-class jde-xemacs efc-xemacs
debug-toolbar jde-import jde-java-font-lock byte-optimize bytecomp
byte-compile jde-which-method jde-java-grammar jde-wiz jde-complete senator
eldoc jde-plugins executable browse-url jde-gen tempo jde-run jde-jdb
jde-bug jde-dbs jde-dbo jde-db overlay jde-parse jde-imenu semantic-imenu
imenu semantic-java thingatpt avltree stack-m elib-node semantic-sb
semantic-ia-sb semantic-analyze semantic-ctxt semantic-cb eieio-speedbar
eieio-custom semanticdb eieio-base speedbar sb-image dframe
semantic-util-modes timer semantic-util semantic assoc working jde-compile
compile cus-edit cus-load cc-mode cc-fonts cc-menus cc-cmds cc-styles
cc-align cc-engine cc-vars cc-defs regexp-opt font-lock semantic-load
jde-help jde-widgets tree-widget beanshell comint ring jde-util efc
wid-edit cus-face eieio advice advice-preload zenirc-autoloads
xwem-autoloads xslt-process-autoloads xslide-autoloads xlib-autoloads
xetla-autoloads xemacs-devel-autoloads xemacs-base-autoloads
x-symbol-autoloads w3-autoloads vm-autoloads viper-autoloads
view-process-autoloads vhdl-autoloads vc-cc-autoloads vc-autoloads
tramp-autoloads tpu-autoloads tooltalk-autoloads tm-autoloads
time-autoloads textools-autoloads text-modes-autoloads texinfo-autoloads
supercite-autoloads strokes-autoloads speedbar-autoloads
sounds-wav-autoloads sounds-au-autoloads sml-mode-autoloads
slider-autoloads sieve-autoloads sh-script-autoloads sgml-autoloads
semantic-autoloads scheme-autoloads sasl-autoloads ruby-modes-autoloads
rmail-autoloads riece-autoloads reftex-autoloads re-builder-autoloads
python-modes-autoloads psgml-dtds-autoloads psgml-autoloads
ps-print-autoloads prog-modes-autoloads pgg-autoloads perl-modes-autoloads
pcomplete-autoloads pcl-cvs-autoloads pc-autoloads os-utils-autoloads
oo-browser-autoloads ocaml-autoloads net-utils-autoloads mmm-mode-autoloads
misc-games-autoloads mine-autoloads mh-e-autoloads mew-autoloads
mailcrypt-autoloads mail-lib-autoloads jde-autoloads ispell-autoloads
ilisp-autoloads igrep-autoloads idlwave-autoloads ibuffer-autoloads
hyperbole-autoloads hm--html-menus-autoloads haskell-mode-autoloads
gnus-autoloads gnats-autoloads general-docs-autoloads games-autoloads
fsf-compat-autoloads frame-icon-autoloads fortran-modes-autoloads
forms-autoloads footnote-autoloads eudc-autoloads eterm-autoloads
eshell-autoloads escreen-autoloads erc-autoloads emerge-autoloads
elib-autoloads eieio-autoloads efs-autoloads edt-autoloads
edit-utils-autoloads ediff-autoloads edebug-autoloads ecrypto-autoloads
ecb-autoloads docbookide-autoloads dired-autoloads dictionary-autoloads
debug-autoloads crisp-autoloads cookie-autoloads clearcase-autoloads
cc-mode-autoloads calendar-autoloads calc-autoloads c-support-autoloads
build-autoloads bbdb-autoloads tex-site apel-autoloads ada-autoloads
Sun-autoloads lisp-autoloads loadhist auto-show fontl-hooks x-iso8859-1
gutter-items menubar-items x-menubar mode-motion mouse itimer auto-save
lisp-mode easymenu iso8859-1 page buff-menu lib-complete help-nomule
cus-file derived frame text-props obsolete cus-start custom widget cl-extra
mini-cl cl cl-19 packages backquote very-early-lisp lucid-scrollbars
cut-buffer lucid-menubars athena-dialogs x c-balloon-help tty-frames tty
toolbar native-sound scrollbar unix-processes multicast network-streams
subprocesses modules menu-accelerator-support menubar berkeley-db md5
xemacs gutter tiff png gif jpeg xpm xbm lisp-float-type linux dialog
devices window-system base64)
Recent keystrokes:
-----------------
misc-user
Recent messages (most recent first):
-----------------------------------
Loading xemacsbug...done
Loading xemacsbug...
Loading efs-cu...done
Loading efs-cu...
Loading font...done
Loading font...
enabling speedbar support
Loading byte-optimize...done
Loading byte-optimize...
Loading bytecomp...done
Loading bytecomp...
jde-java-font-lock: building names cache...empty
jde-java-font-lock: building names cache...
Loading customization dependencies...done
Loading customization dependencies...
Loading cus-face...done
Loading cus-face...
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